Список статей, содержащих ссылки на дуплекс-специфическую нуклеазу
Kshirsagar P, Seshacharyulu P, Muniyan S, Rachagani S, Smith LM, Thompson C,
Shah A, Mallya K, Kumar S, Jain M, Batra SK. DNA-gold nanoprobe-based integrated biosensing technology for non-invasive liquid biopsy of serum miRNA: A new frontier in prostate cancer diagnosis.
Nanomedicine. 2022 Jul;43:102566. doi: 10.1016/j.nano.2022.102566.
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Matsui M, Chu Y, Zhang H, Gagnon KT, Shaikh S, Kuchimanchi S, Manoharan M, Corey DR, Janowski BA. Promoter RNA links transcriptional regulation of inflammatory pathway genes.
Nucleic Acids Res. 2013 Dec;41(22):10086-109 doi: 10.1093/nar/gkt777
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Li N, You X, Chen T, Mackowiak SD, Friedländer MR, Weigt M, Du H, Gogol-Döring A, Chang Z, Dieterich C, Hu Y, Chen W. Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery.
Nucleic Acids Res. 2013 Apr 1;41(6):3619-34 doi: 10.1093/nar/gkt072
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Deng X, Li Z, Zhang W. Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil.
Food Microbiol. 2012 May;30(1):311-5 doi: 10.1016/j.fm.2011.11.001
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Yin BC, Liu YQ, Ye BC. One-step, multiplexed fluorescence detection of microRNAs based on duplex-specific nuclease signal amplification.
J Am Chem Soc. 2012 Mar 21;134(11):5064-7 doi: 10.1021/ja300721s
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Sauvage C, Vagner M, Derôme N, Audet C, Bernatchez L. Coding Gene Single Nucleotide Polymorphism Mapping and Quantitative Trait Loci Detection for Physiological Reproductive Traits in Brook Charr, Salvelinus fontinalis.
G3 (Bethesda). 2012 Mar;2(3):379-92 doi: 10.1534/g3.111.001867
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Gijavanekar C, Strych U, Fofanov Y, Fox GE, Willson RC. Rare target enrichment for ultrasensitive PCR detection using cot-rehybridization and duplex-specific nuclease.
Analytical Biochemistry. 2012 Feb 1;421(1):81-5 doi: 10.1016/j.ab.2011.11.010
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Swennenhuis JF, Foulk B, Coumans FA, Terstappen LW. Construction of repeat-free fluorescence in situ hybridization probes.
Nucleic Acids Res. 2012 Feb;40(3):e20 doi: 10.1093/nar/gkr1123
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Garczynski SF, Wanner KW, Unruh TR. Identification and initial characterization of the 3′ end of gene transcripts encoding putative members of the pheromone receptor subfamily in Lepidoptera.
Insect Science. 2012;19(1):64-74 ISI:000299391800008 http://onlinelibrary.wiley.com
Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M, Murat C, Martin F, Kogel KH. Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica.
PLoS Pathog. 2011 Oct;7(10):e1002290 doi: 10.1371/journal.ppat.1002290
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Rigault P, Boyle B, Lepage P, Cooke JE, Bousquet J, MacKay JJ. A white spruce gene catalog for conifer genome analyses.
Plant Physiol. 2011 Sep;157(1):14-28 doi: 10.1104/pp.111.179663
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Su CL, Chao YT, Alex Chang YC, Chen WC, Chen CY, Lee AY, Hwa KT, Shih MC. De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.
Plant Cell Physiol. 2011 Sep;52(9):1501-14 doi: 10.1093/pcp/pcr097
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Shagina IA, Bogdanova EA, Altshuler IM, Lukyanov SA, Shagin DA. Application of the duplex-specific nuclease for fast analysis of single nucleotide polymorphisms and detection of target DNA in complex PCR products.
Bioorg Khim. 2011 Jul-Aug;37(4):522-9 (in Russian)
pmid: 22096995
Shtutman M, Baig M, Levina E, Hurteau G, Lim CU, Broude E, Nikiforov M, Harkins TT, Carmack CS, Ding Y, Wieland F, Buttyan R, Roninson IB. Tumor-specific silencing of COPZ2 gene encoding coatomer protein complex subunit ζ 2 renders tumor cells dependent on its paralogous gene COPZ1.
Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12449-54 doi: 10.1073/pnas.1103842108
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Liu M, Yuan M, Lou X, Mao H, Zheng D, Zou R, Zou N, Tang X, Zhao J. Label-free optical detection of single-base mismatches by the combination of nuclease and gold nanoparticles.
Biosens Bioelectron. 2011 Jul 15;26(11):4294-300 doi: 10.1016/j.bios.2011.04.014
pmid: 21605966
Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W. De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.
Genome Res. 2011 Jul;21(7):1193-200 doi: 10.1101/gr.113779.110
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Feldmeyer B, Wheat CW, Krezdorn N, Rotter B, Pfenninger M. Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.
BMC Genomics. 2011 Jun 16;12:317 doi: 10.1186/1471-2164-12-317
pmid: 21679424
Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L. Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring.
BMC Genomics. 2011 May 12;12:234 doi: 10.1186/1471-2164-12-234
pmid: 21569398
Christodoulou DC, Gorham JM, Herman DS, Seidman JG. Construction of normalized RNA-seq libraries for next-generation sequencing using the crab duplex-specific nuclease.
Curr Protoc Mol Biol. 2011 Apr;Chapter 4:Unit4.12 doi: 10.1002/0471142727.mb0412s94
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Gu K, Chiam H, Tian D, Yin Z. Molecular cloning and expression of heteromeric ACCase subunit genes from Jatropha curcas.
Plant Sci. 2011 Apr;180(4):642-9 doi: 10.1016/j.plantsci.2011.01.007
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Whitfield AE, Rotenberg D, Aritua V, Hogenhout SA. Analysis of expressed sequence tags from Maize mosaic rhabdovirus-infected gut tissues of Peregrinus maidis reveals the presence of key components of insect innate immunity.
Insect Mol Biol. 2011 Apr;20(2):225-42 doi: 10.1111/j.1365-2583.2010.01060.x
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Seeb JE, Pascal CE, Grau ED, Seeb LW, Templin WD, Harkins T, Roberts SB. Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.
Mol Ecol Resour. 2011 Mar;11(2):335-48 doi: 10.1111/j.1755-0998.2010.02936.x
pmid: 21429141
Shrestha S, Prasad SV, Kim Y. An immunological role of a PKC alpha binding protein (PICK1) expressed in the hemocytes of the beet armyworm, Spodoptera exigua.
Comp Biochem Physiol B Biochem Mol Biol. 2011 Mar;158(3):216-22 doi: 10.1016/j.cbpb.2010.11.007
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Sutherland GT, Janitz M, Kril JJ. Understanding the pathogenesis of Alzheimer's disease: will RNA-Seq realize the promise of transcriptomics?
J Neurochem. 2011 Mar;116(6):937-46 doi: 10.1111/j.1471-4159.2010.07157.x
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Dai ZM, Li R, Dai L, Yang JS, Chen S, Zeng QG, Yang F, Yang WJ. Determination in oocytes of the reproductive modes for the brine shrimp Artemia parthenogenetica.
Biosci Rep. 2011 Feb;31(1):17-30 doi: 10.1042/BSR20090141
pmid: 20353401
Logacheva MD, Kasianov AS, Vinogradov DV, Samigullin TH, Gelfand MS, Makeev VJ, Penin AA. De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).
BMC Genomics. 2011 Jan 13;12:30 doi: 10.1186/1471-2164-12-30
pmid: 21232141
Nowack EC, Vogel H, Groth M, Grossman AR, Melkonian M, Glöckner G. Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora.
Mol Biol Evol. 2011 Jan;28(1):407-22 doi: 10.1093/molbev/msq209
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Bogdanova EA, Barsova EV, Shagina IA, Scheglov A, Anisimova V, Vagner LL, Lukyanov SA, Shagin DA. Normalization of full-length-enriched cDNA.
Methods Mol Biol. 2011;729:85-98 doi: 10.1007/978-1-61779-065-2_6
pmid: 21365485
Bogdanova EA, Shagina IA, Yanushevich YG, Vagner LL, Lukyanov SA, Shagin DA. Preparation of prokaryotic cDNA for full-scale transcriptome analysis.
Russian Journal of Bioorganic Chemistry. 2011;37(6):775-8 ISI:000297344600012
Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK. Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).
DNA Res. 2011;18(3):153-64 doi: 10.1093/dnares/dsr007
pmid: 21565938
Shagina IA, Bogdanova EA, Altshuler IM, Lukyanov SA, Shagin DA. The Use of Duplex-Specific Crab Nuclease for Rapid Analysis of Single-Nucleotide Polymorphisms and the Detection of DNA Targets in Complex PCR Products.
Russian Journal of Bioorganic Chemistry. 2011;37(4):464-71 ISI:000295533100010
Coppe A, Pujolar JM, Maes GE, Larsen PF, Hansen MM, Bernatchez L, Zane L, Bortoluzzi S. Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel.
BMC Genomics. 2010 Nov 16;11:635 doi: 10.1186/1471-2164-11-635
pmid: 21080939
Lee EK, Jin YW, Park JH, Yoo YM, Hong SM, Amir R, Yan Z, Kwon E, Elfick A, Tomlinson S, Halbritter F, Waibel T, Yun BW, Loake GJ. Cultured cambial meristematic cells as a source of plant natural products.
Nat Biotechnol. 2010 Nov;28(11):1213-7 doi: 10.1038/nbt.1693
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Louro B, Passos AL, Souche EL, Tsigenopoulos C, Beck A, Lagnel J, Bonhomme F, Cancela L, Cerdà J, Clark MS, Lubzens E, Magoulas A, Planas JV, Volckaert FA, Reinhardt R, Canario AV. Gilthead sea bream (Sparus auratus) and European sea bass (Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers.
Mar Genomics. 2010 Sep-Dec;3(3-4):179-91 doi: 10.1016/j.margen.2010.09.005
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Galindo J, Grahame JW, Butlin RK. An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis.
J Evol Biol. 2010 Sep 1;23(9):2004-16 doi: 10.1111/j.1420-9101.2010.02071.x
pmid: 20695960
Rotenberg D, Whitfield AE. Analysis of expressed sequence tags for Frankliniella occidentalis, the western flower thrips.
Insect Mol Biol. 2010 Aug;19(4):537-51 doi: 10.1111/j.1365-2583.2010.01012.x
pmid: 20522119
Wang J, Xia Y. Construction and preliminary analysis of a normalized cDNA library from Locusta migratoria manilensis topically infected with Metarhizium anisopliae var. acridum.
J Insect Physiol. 2010 Aug;56(8):998-1002 doi: 10.1016/j.jinsphys.2010.05.009
pmid: 20470782
Shagina I, Bogdanova E, Mamedov IZ, Lebedev Y, Lukyanov S, Shagin D. Normalization of genomic DNA using duplex-specific nuclease.
Biotechniques. 2010 Jun;48(6):455-9 doi: 10.2144/000113422
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Zhou P, Zhang Z, Wang Y, Zou Z, Xie F. EST analysis and identification of gonad-related genes from the normalized cDNA library of large yellow croaker, Larimichthys crocea.
Comp Biochem Physiol Part D Genomics Proteomics. 2010 Jun;5(2):89-97 doi: 10.1016/j.cbd.2010.01.002
pmid: 20403775
Lee BY, Howe AE, Conte MA, D'Cotta H, Pepey E, Baroiller JF, di Palma F, Carleton KL, Kocher TD. An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.
BMC Genomics. 2010 Apr 30;11:278 doi: 10.1186/1471-2164-11-278
pmid: 20433739
Bogdanova EA, Shagina I, Barsova EV, Kelmanson I, Shagin DA, Lukyanov SA. Normalizing cDNA libraries.
Curr Protoc Mol Biol. 2010 Apr;Chapter 5:Unit 5.12.1-27 doi: 10.1002/0471142727.mb0512s90
pmid: 20373503
Mello LV, O'Meara H, Rigden DJ, Paterson S. Identification of novel aspartic proteases from Strongyloides ratti and characterisation of their evolutionary relationships, stage-specific expression and molecular structure.
BMC Genomics. 2009 Dec 16;10:611 doi: 10.1186/1471-2164-10-611
pmid: 20015380
Simon S, Strauss S, von Haeseler A, Hadrys H. A phylogenomic approach to resolve the basal pterygote divergence.
Mol Biol Evol. 2009 Dec;26(12):2719-30 doi: 10.1093/molbev/msp191
pmid: 19713325
Birol I, Jackman SD, Nielsen C, Qian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Horsman DE, Connors JM, Gascoyne RD, Marra MA, Jones SJ. De novo Transcriptome Assembly with ABySS.
Bioinformatics. 2009 Nov 1;25(21):2872-7 doi: 10.1093/bioinformatics/btp367
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Tartar A, Wheeler MM, Zhou X, Coy MR, Boucias DG, Scharf ME. Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes.
Biotechnol Biofuels. 2009 Oct 15;2:25 doi: 10.1186/1754-6834-2-25
pmid: 19832970
Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW. Whole genome amplification and de novo assembly of single bacterial cells.
PLoS One. 2009 Sep 2;4(9):e6864 doi: 10.1371/journal.pone.0006864
pmid: 19724646
Zhao Y, Sfeir AJ, Zou Y, Buseman CM, Chow TT, Shay JW, Wright WE. Telomere extension occurs at most chromosome ends and is uncoupled from fill-in in human cancer cells.
Cell. 2009 Aug 7;138(3):463-75 doi: 10.1016/j.cell.2009.05.026
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Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachere E, Tanguy A, Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, Davey G, Lapegue S, Sauvage C, Corporeau C, Moal J, Gavory F, Wincker P, Moreews F, Klopp C, Mathieu M, Boudry P, Favrel P. Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.
BMC Genomics. 2009 Jul 29;10:341 doi: 10.1186/1471-2164-10-341
pmid: 19640306
Zhou B, Dong Q, Ma R, Chen Y, Yang J, Sun LZ, Huang C. Rapid isolation of highly pure single-stranded DNA from phagemids.
Anal Biochem. 2009 Jun 15;389(2):177-9 doi: 10.1016/j.ab.2009.03.044
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Lamm N, Ordan E, Shponkin R, Richler C, Aker M, Tzfati Y. Diminished telomeric 3' overhangs are associated with telomere dysfunction in Hoyeraal-Hreidarsson syndrome.
PLoS One. 2009 May 22;4(5):e5666 doi: 10.1371/journal.pone.0005666
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Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Hogenhout SA, Spieth J, Sternberg PW, Wilson RK, Grewal PS. Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1.
BMC Genomics. 2009 Apr 30;10:205 doi: 10.1186/1471-2164-10-205
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Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.
BMC Genomics. 2009 Apr 20;10:163 doi: 10.1186/1471-2164-10-163
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Whetten RW, Sofia VA, Frampton J. Polymerase chain reaction preparation of template for massively parallel pyrosequencing.
J Biomol Tech. 2009 Apr;20(2):128-34
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Yue GH, Zhu ZY, Wang CM, Xia JH. A simple and efficient method for isolating polymorphic microsatellites from cDNA.
BMC Genomics. 2009 Mar 25;10:125 doi: 10.1186/1471-2164-10-125
pmid: 19320968
Denekamp NY, Thorne MA, Clark MS, Kube M, Reinhardt R, Lubzens E. Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilis.
BMC Genomics. 2009 Mar 13;10:108 doi: 10.1186/1471-2164-10-108
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Blow N. Transcriptomics: The digital generation.
Nature. 2009 Mar 12;458(7235):239-42 doi: 10.1038/458239a
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Bogdanova EA, Shagina IA, Mudrik E, Ivanov I, Amon P, Vagner LL, Lukyanov SA, Shagin DA. DSN depletion is a simple method to remove selected transcripts from cDNA populations.
Mol Biotechnol. 2009 Mar;41((3)):247-53 doi: 10.1007/s12033-008-9131-y
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Zhao Q, Caballero OL, Levy S, Stevenson BJ, Iseli C, de Souza SJ, Galante PA, Busam D, Leversha MA, Chadalavada K, Rogers YH, Venter JC, Simpson AJ, Strausberg RL. Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line.
Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1886-91 doi: 10.1073/pnas.0812945106
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He M, Xia Y. Construction and analysis of a normalized cDNA library from Metarhizium anisopliae var. acridum germinating and differentiating on Locusta migratoria wings.
FEMS Microbiol Lett. 2009 Feb;291(1):127-35 doi: 10.1111/j.1574-6968.2008.01447.x
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Pauchet Y, Freitak D, Heidel-Fischer HM, Heckel DG, Vogel H. Immunity or digestion: glucanase activity in a glucan-binding protein family from Lepidoptera.
J Biol Chem. 2009 Jan 23;284(4):2214-24 doi: 10.1074/jbc.M806204200
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Barker MS, Vogel H, Schranz ME. Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales.
Gen Biol Evol. 2009;2009:391-9 doi: 10.1093/gbe/evp040
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Clifton SW, Mitreva M. Strategies for undertaking expressed sequence tag (EST) projects.
Methods Mol Biol. 2009;533:13-32 doi: 10.1007/978-1-60327-136-3_2
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Fox S, Filichkin S, Mockler TC. Applications of Ultra-high-Throughput Sequencing.
Methods Mol Biol. 2009;553:79-108 doi: 10.1007/978-1-60327-563-7_5
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Ogundiwin EA, Marti C, Forment J, Pons C, Granell A, Gradziel TM, Peace CP, Crisosto CH. Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit.
Plant Mol Biol. 2008 Nov;68(4-5):379-97 doi: 10.1007/s11103-008-9378-5
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Anisimova VE, Shcheglov AS, Bogdanova EA, Rebrikov DV, Nekrasov AN, Barsova EV, Shagin DA, Lukyanov SA. Is crab duplex-specific nuclease a member of the Serratia family of non-specific nucleases?
Gene. 2008 Jul 15;418(1-2):41-8 doi: 10.1016/j.gene.2008.04.005
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Anisimova VE, Rebrikov DV, Shagin DA, Kozhemyako VB, Menzorova NI, Staroverov DB, Ziganshin R, Vagner LL, Rasskazov VA, Lukyanov SA, Shcheglov AS. Isolation, characterization and molecular cloning of duplex-specific nuclease from the hepatopancreas of the Kamchatka crab.
BMC Biochem. 2008 May 21;9:14 doi: 10.1186/1471-2091-9-14
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Fischer HM, Wheat CW, Heckel DG, Vogel H. Evolutionary origins of a novel host plant detoxification gene in butterflies.
Mol Biol Evol. 2008 May;25(5):809-20 doi: 10.1093/molbev/msn014
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Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.
Mol Ecol. 2008 Apr;17(7):1636-47 doi: 10.1111/j.1365-294X.2008.03666.x
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Bogdanova EA, Shagin DA, Lukyanov SA. Normalization of full-length enriched cDNA.
Mol Biosyst. 2008 Mar;4(3):205-12 doi: 10.1039/b715110c
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Salzburger W, Renn SC, Steinke D, Braasch I, Hofmann HA, Meyer A. Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs.
BMC Genomics. 2008 Feb 25;9:96 doi: 10.1186/1471-2164-9-96
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Zhao Y, Hoshiyama H, Shay JW, Wright WE. Quantitative telomeric overhang determination using a double-strand specific nuclease.
Nucleic Acids Res. 2008 Feb;36(3):e14
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Peng RH, Xiong AS, Xue Y, Li X, Liu JG, Cai B, Yao QH. Kamchatka crab duplex-specific nuclease-mediated transcriptome subtraction method for identifying long cDNAs of differentially expressed genes.
Anal Biochem. 2008 Jan 15;372(2):148-55
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Xie YF, Wang BC, Li B, Cai YF, Xie L, Xia YX, Chang PA, Jiang HZ. Construction of cDNA library of cotton mutant (Xiangmian-18) library during gland forming stage.
Colloids Surf B Biointerfaces. 2007 Nov 15;60(2):258-263
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Shcheglov A, Zhulidov P, Bogdanova E, Shagin D. Normalization of cDNA Libraries.
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Modern Applications.
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Moroz LL, Edwards JR, Puthanveettil SV, Kohn AB, Ha T, Heyland A, Knudsen B, Sahni A, Yu F, Liu L, Jezzini S, Lovell P, Iannucculli W, Chen M, Nguyen T, Sheng H, Shaw R, Kalachikov S, Panchin YV, Farmerie W, Russo JJ, Ju J, Kandel ER. Neuronal transcriptome of aplysia: neuronal compartments and circuitry.
Cell. 2006 Dec 29;127(7):1453-67
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Du C, Ge B, Liu Z, Fu K, Chan WC, McKeithan TW. PCR-based generation of shRNA libraries from cDNAs.
BMC Biotechnol. 2006 Jun 21;6:28
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Anisimova VE, Rebrikov DV, Zhulidov PA, Staroverov DB, Lukyanov SA, Shcheglov AS. Renaturation, activation, and practical use of recombinant duplex-specific nuclease from Kamchatka crab.
Biochemistry (Mosc). 2006 May;71(5):513-9
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Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Tao Q, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, Cheng JF, de Jong PJ, Pevzner P, Collins C. Decoding the fine-scale structure of a breast cancer genome and transcriptome.
Genome Res. 2006 Mar;16(3):394-404
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Deng W, Zhu X, Skogerbo G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R. Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.
Genome Res. 2006 Jan;16(1):20-9
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Altshuler IM, Zhulidov PA, Bogdanova EA, Mudrik NN, Shagin DA. Application of the duplex-specific nuclease preference method to the analysis of point mutations in human genes.
Bioorg Khim. 2005 Nov-Dec;31(6):627-36
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Wang Z, Chua HK, Gusti AA, He F, Fenner B, Manopo I, Wang H, Kwang J. RING-H2 protein WSSV249 from white spot syndrome virus sequesters a shrimp ubiquitin-conjugating enzyme, PvUbc, for viral pathogenesis.
J Virol. 2005 Jul;79(14):8764-72
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Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, Shagin DA. A method for the preparation of normalized cDNA libraries enriched with full-length sequences.
Bioorg Khim. 2005 Mar-Apr;31(2):186-94
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Diatchenko L, Slade GD, Nackley AG, Bhalang K, Sigurdsson A, Belfer I, Goldman D, Xu K, Shabalina SA, Shagin D, Max MB, Makarov SS, Maixner W. Genetic basis for individual variations in pain perception and the development of a chronic pain condition.
Hum Mol Genet. 2005 Jan 1;14(1):135-43
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Lu L, Kwang J. Identification of a novel shrimp protein phosphatase and its association with latency-related ORF427 of white spot syndrome virus.
FEBS Lett. 2004 Nov 5;577(1-2):141-6
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Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, Shagin DA. Simple cDNA normalization using kamchatka crab duplex-specific nuclease.
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