Ishimoto T, Mori H. A new bioluminescence-based tool for modulating target proteins in live cells.
Sci Rep. 2019 Dec 3;9(1):18239 doi: 10.1038/s41598-019-54712-y.
pmid: 31796796
Formella I, Svahn AJ, Radford RAW, Don EK, Cole NJ, Hogan A, Lee A, Chung RS, Morsch M. Real-time visualization of oxidative stress-mediated neurodegeneration of individual spinal motor neurons in vivo.
Redox Biol. 2018 Aug 23;19:226-234 doi: 10.1016/j.redox.2018.08.011
pmid: 30193184
Moiseev A, Snopova L, Kuznetsov S, Buyanova N, Elagin V, Sirotkina M, Kiseleva E, Matveev L, Zaytsev V, Feldchtein F, Zagaynova E, Gelikonov V, Gladkova N, Vitkin A, Gelikonov G. Pixel classification method in optical coherence tomography for tumor segmentation and its complementary usage with OCT microangiography.
J Biophotonics. 2017 Aug 29.;[Epub ahead of print] doi: 10.1002/jbio.201700072
pmid: 28853237
Liao ZX, Kempson IM, Fa YC, Liu MC, Hsieh LC, Huang KY, Wang LF. Magnetically Guided Viral Transduction of Gene-Based Sensitization for Localized Photodynamic Therapy To Overcome Multidrug Resistance in Breast Cancer Cells.
Bioconjug Chem. 2017 Jun 21;28(6):1702-1708 doi: 10.1021/acs.bioconjchem.7b00162
pmid: 28482158
Jiang HN, Li Y, Cui ZJ. Photodynamic Physiology-Photonanomanipulations in Cellular Physiology with Protein Photosensitizers.
Front Physiol. 2017 Apr 4;8:191 doi: 10.3389/fphys.2017.00191
pmid: 28421000
Tan SY, Teh C, Ang CY, Li M, Li P, Korzh V, Zhao Y. Responsive mesoporous silica nanoparticles for sensing of hydrogen peroxide and simultaneous treatment toward heart failure.
Nanoscale. 2017 Feb 9;9(6):2253-2261 doi: 10.1039/c6nr08869d
pmid: 28124705
Tan R, Nakajima S, Wang Q, Sun H, Xue J, Wu J, Hellwig S, Zeng X, Yates NA, Smithgall TE, Lei M, Jiang Y, Levine AS, Su B, Lan L. Nek7 Protects Telomeres from Oxidative DNA Damage by Phosphorylation and Stabilization of TRF1.
Mol Cell. 2017 Feb 8;pii: S1097-2765(17)30041-2 doi: 10.1016/j.molcel.2017.01.015. [Epub ahead of print]
pmid: 28216227
Liang L, Lu Y, Zhang R, Care A, Ortega TA, Deyev SM, Qian Y, Zvyagin AV. Deep-penetrating photodynamic therapy with KillerRed mediated by upconversion nanoparticles.
Acta Biomater. 2017 Jan 4;pii: S1742-7061(17)30004-1 doi: 10.1016/j.actbio.2017.01.004. [Epub ahead of print]
pmid: 28063989
Fransen M, Brees C. KillerRed as a Tool to Study the Cellular Responses to Peroxisome-Derived Oxidative Stress.
Methods Mol Biol. 2017;1595:165-179 doi: 10.1007/978-1-4939-6937-1_15
pmid: 28409460
Tan R, Lan L. Induction of Site-Specific Oxidative Damage at Telomeres by Killerred-Fused Shelretin Proteins.
Methods Mol Biol. 2017;1587:139-146 doi: 10.1007/978-1-4939-6892-3_14
pmid: 28324506
Tseng SJ, Huang KY, Kempson IM, Kao SH, Liu MC, Yang SC, Liao ZX, Yang PC. Remote Control of Light-Triggered Virotherapy.
ACS Nano. 2016 Nov 22;10(11):10339-10346
pmid: 27934080
Petrova NV, Luzhin AV, Serebrovskaya EO, Ryumina AP, Velichko AK, Razin SV, Kantidze OL. Inducing cellular senescence in vitro by using genetically encoded photosensitizers.
Aging (Albany NY). 2016 Oct 14;8(10):2449-2462 DOI: 10.18632/aging.101065
pmid: 27744420
Campbell AE, Bennett D. Targeting protein function: the expanding toolkit for conditional disruption.
Biochem J. 2016 Sep 1;473(17):2573-89 doi: 10.1042/BCJ20160240
pmid: 27574023
Takehara K, Tazawa H, Okada N, Hashimoto Y, Kikuchi S, Kuroda S, Kishimoto H, Shirakawa Y, Narii N, Mizuguchi H, Urata Y, Kagawa S, Fujiwara T. Targeted Photodynamic Virotherapy Armed with a Genetically Encoded Photosensitizer.
Mol Cancer Ther. 2016 Jan;15(1):199-208 doi: 10.1158/1535-7163.MCT-15-0344
pmid: 26625896
Pletneva NV, Pletnev VZ, Sarkisyan KS, Gorbachev DA, Egorov ES, Mishin AS, Lukyanov KA, Dauter Z, Pletnev S. Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore.
PLoS One. 2015 Dec 23;10(12):e0145740 doi: 10.1371/journal.pone.0145740
pmid: 26699366
Sarkisyan KS, Zlobovskaya OA, Gorbachev DA, Bozhanova NG, Sharonov GV, Staroverov DB, Egorov ES, Ryabova AV, Solntsev KM, Mishin AS, Lukyanov KA. KillerOrange, a Genetically Encoded Photosensitizer Activated by Blue and Green Light.
PLoS One. 2015 Dec 17;10(12):e0145287 doi: 10.1371/journal.pone.0145287
pmid: 26679300
Shirmanova M, Yuzhakova D, Snopova L, Perelman G, Serebrovskaya E, Lukyanov K, Turchin I, Subochev P, Lukyanov S, Kamensky V, Zagaynova E. Towards PDT with Genetically Encoded Photosensitizer KillerRed: A Comparison of Continuous and Pulsed Laser Regimens in an Animal Tumor Model.
PLoS One. 2015 Dec 11;10(12):e0144617 doi: 10.1371/journal.pone.0144617
pmid: 26657001
Cho SJ, Kim SY, Jeong HC, Cheong H, Kim D, Park SJ, Choi JJ, Kim H, Chung HM, Moon SH, Cha HJ. Repair of Ischemic Injury by Pluripotent Stem Cell Based Cell Therapy without Teratoma through Selective Photosensitivity.
Stem Cell Reports. 2015 Nov 11;pii: S2213-6711(15)00301-X. doi: 10.1016/j.stemcr.2015.10.004. [Epub ahead of print]
pmid: 26584542
Nordgren M, Francisco T, Lismont C, Hennebel L, Brees C, Wang B, Van Veldhoven PP, Azevedo JE, Fransen M. Export-deficient monoubiquitinated PEX5 triggers peroxisome removal in SV40 large T antigen-transformed mouse embryonic fibroblasts.
Autophagy. 2015 Aug 3;11(8):1326-40 doi: 10.1080/15548627.2015.1061846
pmid: 26086376
Yuzhakova DV, Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Druzhkova IN, Shakhov BE, Lukyanov SA, Zagaynova EV. CT26 murine colon carcinoma expressing the red fluorescent protein KillerRed as a highly immunogenic tumor model.
J Biomed Opt. 2015 Aug 1;20(8):88002 doi: 10.1117/1.JBO.20.8.088002
pmid: 26277828
Sun L, Tan R, Xu J, LaFace J, Gao Y, Xiao Y, Attar M, Neumann C, Li GM, Su B, Liu Y, Nakajima S, Levine AS, Lan L. Targeted DNA damage at individual telomeres disrupts their integrity and triggers cell death.
Nucleic Acids Res. 2015 Jul 27;43(13):6334-47 doi: 10.1093/nar/gkv598
pmid: 26082495
Yan L, Kanada M, Zhang J, Okazaki S, Terakawa S. Photodynamic Treatment of Tumor with Bacteria Expressing KillerRed.
PLoS One. 2015 Jul 27;10(7):e0131518 doi: 10.1371/journal.pone.0131518
pmid: 26213989
Walbrecq G, Wang B, Becker S, Hannotiau A, Fransen M, Knoops B. Antioxidant cytoprotection by peroxisomal peroxiredoxin-5.
Free Radic Biol Med. 2015 Jul;84:215-26 doi: 10.1016/j.freeradbiomed.2015.02.032
pmid: 25772011
Tseng SJ, Liao ZX, Kao SH, Zeng YF, Huang KY, Li HJ, Yang CL, Deng YF, Huang CF, Yang SC, Yang PC, Kempson IM. Highly specific in vivo gene delivery for p53-mediated apoptosis and genetic photodynamic therapies of tumour.
Nat Commun. 2015 Mar 5;6:6456 doi: 10.1038/ncomms7456
pmid: 25739372
Lan L, Nakajima S, Wei L, Sun L, Hsieh CL, Sobol RW, Bruchez M, Van Houten B, Yasui A, Levine AS. Novel method for site-specific induction of oxidative DNA damage reveals differences in recruitment of repair proteins to heterochromatin and euchromatin.
Nucleic Acids Res. 2014 Feb;42(4):2330-45 doi: 10.1093/nar/gkt1233
pmid: 24293652
Liao ZX, Li YC, Lu HM, Sung HW. A genetically-encoded KillerRed protein as an intrinsically generated photosensitizer for photodynamic therapy.
Biomaterials. 2014 Jan;35(1):500-8 doi: 10.1016/j.biomaterials.2013.09.075
pmid: 24112805
Wang B, Van Veldhoven PP, Brees C, Rubio N, Nordgren M, Apanasets O, Kunze M, Baes M, Agostinis P, Fransen M. Mitochondria are targets for peroxisome-derived oxidative stress in cultured mammalian cells.
Free Radic Biol Med. 2013 Dec;65:882-94 doi: 10.1016/j.freeradbiomed.2013.08.173
pmid: 23988789
McMillan SC, Xu ZT, Zhang J, Teh C, Korzh V, Trudeau VL, Akimenko MA. Regeneration of breeding tubercles on zebrafish pectoral fins requires androgens and two waves of revascularization.
Development. 2013 Nov;140(21):4323-34 doi: 10.1073/pnas.1104097108
pmid: 24089472
Williams DC, Bejjani RE, Ramirez PM, Coakley S, Kim SA, Lee H, Wen Q, Samuel A, Lu H, Hilliard MA, Hammarlund M. Rapid and permanent neuronal inactivation in vivo via subcellular generation of reactive oxygen with the use of KillerRed.
Cell Rep. 2013 Oct 31;5(2):553-63 doi: 10.1016/j.celrep.2013.09.023
pmid: 24209746
Byrne LC, Khalid F, Lee T, Zin EA, Greenberg KP, Visel M, Schaffer DV, Flannery JG. AAV-mediated, optogenetic ablation of Müller Glia leads to structural and functional changes in the mouse retina.
PLoS One. 2013 Sep 27;8(9):e76075 doi: 10.1371/journal.pone.0076075
pmid: 24086689
Kobayashi J, Shidara H, Morisawa Y, Kawakami M, Tanahashi Y, Hotta K, Oka K. A method for selective ablation of neurons in C. elegans using the phototoxic fluorescent protein, KillerRed.
Neurosci Lett. 2013 Aug 26;548:261-4 doi: 10.1016/j.neulet.2013.05.053
pmid: 23748043
Waldeck W, Mueller G, Glatting KH, Hotz-Wagenblatt A, Diessl N, Chotewutmonti S, Langowski J, Semmler W, Wiessler M, Braun K. Spatial localization of genes determined by intranuclear DNA fragmentation with the fusion proteins lamin KRED and histone KRED und visible light.
Int J Med Sci. 2013 Jul 7;10(9):1136-48 doi: 10.7150/ijms.6121
pmid: 23869190
Vitriol EA, Wise AL, Berginski ME, Bamburg JR, Zheng JQ. Instantaneous inactivation of cofilin reveals its function of F-actin disassembly in lamellipodia.
Mol Biol Cell. 2013 Jul;24(14):2238-47 doi: 10.1091/mbc.E13-03-0156
pmid: 23676663
Heo JM, Nielson JR, Dephoure N, Gygi SP, Rutter J. Intramolecular interactions control Vms1 translocation to damaged mitochondria.
Mol Biol Cell. 2013 May;24(9):1263-73 doi: 10.1091/mbc.E13-02-0072
pmid: 23468520
Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Snopova LB, Sirotkina MA, Prodanetz NN, Bugrova ML, Minakova EA, Turchin IV, Kamensky VA, Lukyanov SA, Zagaynova EV. Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice.
J Biophotonics. 2013 Mar;6(3):283-90 doi: 10.1002/jbio.201200056
pmid: 22696211
Bonekamp NA, Islinger M, Lázaro MG, Schrader M. Cytochemical detection of peroxisomes and mitochondria.
Methods Mol Biol. 2013;931:467-82 doi: 10.1007/978-1-62703-056-4_24
pmid: 23027018
Yang JY, Yang WY. Bit-by-bit autophagic removal of parkin-labelled mitochondria.
Nat Commun. 2013;4:2428 doi: 10.1038/ncomms3428
pmid: 24013556
de Rosny E, Carpentier P. GFP-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein KillerRed Unraveled by Structural and Spectroscopic Investigations.
J Am Chem Soc. 2012 Oct 31;134(43):18015-21 doi: 10.1021/ja3073337
pmid: 23025285
Wang Y, Nartiss Y, Steipe B, McQuibban GA, Kim PK. ROS-induced mitochondrial depolarization initiates PARK2/PARKIN-dependent mitochondrial degradation by autophagy.
Autophagy. 2012 Oct 1;8(10):1462-76 doi: 10.4161/auto.21211
pmid: 22889933
Shibuya T, Tsujimoto Y. Deleterious effects of mitochondrial ROS generated by KillerRed photodynamic action in human cell lines and C. elegans.
J Photochem Photobiol B. 2012 Aug 22;117C:1-12 doi: 10.1016/j.jphotobiol.2012.08.005
pmid: 23000754
Kondrychyn I, Teh C, Garcia-Lecea M, Guan Y, Kang A, Korzh V. Zebrafish Enhancer TRAP transgenic line database ZETRAP 2.0.
Zebrafish. 2011 Dec;8(4):181-2 doi: 10.1089/zeb.2011.0718
pmid: 22181660
Vegh RB, Solntsev KM, Kuimova MK, Cho S, Liang Y, Loo BL, Tolbert LM, Bommarius AS. Reactive oxygen species in photochemistry of the red fluorescent protein "Killer Red".
Chem Commun (Camb). 2011 May 7;47(17):4887-9 doi: 10.1039/c0cc05713d
pmid: 21359336
Liu X, Shi R, Zou D, Li Z, Liu X, Chen Y, Yang X, Zhou Y, Zheng D. Positive selection vector using the KillerRed gene.
Anal Biochem. 2011 May 1;412(1):120-2 doi: 10.1016/j.ab.2011.01.034
pmid: 21284929
Korzh V, Teh C, Kondrychyn I, Chudakov DM, Lukyanov S. Visualizing compound transgenic zebrafish in development: a tale of green fluorescent protein and KillerRed.
Zebrafish. 2011 Mar;8(1):23-9 doi: 10.1089/zeb.2011.0689
pmid: 21348774
Waldeck W, Mueller G, Wiessler M, Tóth K, Braun K. Positioning effects of KillerRed inside of cells correlate with DNA strand breaks after activation with visible light.
Int J Med Sci. 2011 Jan 21;8(2):97-105
pmid: 21278894
Lee A, Mathuru AS, Teh C, Kibat C, Korzh V, Penney TB, Jesuthasan S. The habenula prevents helpless behavior in larval zebrafish.
Curr Biol. 2010 Dec 21;20(24):2211-6 doi: 10.1016/j.cub.2010.11.025
pmid: 21145744
Destaing O, Planus E, Bouvard D, Oddou C, Badowski C, Bossy V, Raducanu A, Fourcade B, Albiges-Rizo C, Block MR. beta1A integrin is a master regulator of invadosome organization and function.
Mol Biol Cell. 2010 Dec;21(23):4108-19 doi: 10.1091/mbc.E10-07-0580
pmid: 20926684
Teh C, Chudakov DM, Poon KL, Mamedov IZ, Sek JY, Shidlovsky K, Lukyanov S, Korzh V. Optogenetic in vivo cell manipulation in KillerRed-expressing zebrafish transgenics.
BMC Dev Biol. 2010 Nov 2;10:110 doi: 10.1186/1471-213X-10-110
pmid: 21040591
Del Bene F, Wyart C, Robles E, Tran A, Looger L, Scott EK, Isacoff EY, Baier H. Filtering of visual information in the tectum by an identified neural circuit.
Science. 2010 Oct 29;330(6004):669-73 doi: 10.1126/science.1192949
pmid: 21030657
Lukyanov KA, Serebrovskaya EO, Lukyanov S, Chudakov DM. Fluorescent proteins as light-inducible photochemical partners.
Photochem Photobiol Sci. 2010 Oct 28;9(10):1301-6 doi: 10.1039/c0pp00114g
pmid: 20672171
Roy A, Carpentier P, Bourgeois D, Field M. Diffusion pathways of oxygen species in the phototoxic fluorescent protein KillerRed.
Photochem Photobiol Sci. 2010 Oct 28;9(10):1342-50 doi: 10.1039/c0pp00141d
pmid: 20820672
Liu X, Liu X, Zhou Y, Zou D, Shi R, Li Z, Zheng D. T vector bearing KillerRed protein marker for red/white cloning screening.
Anal Biochem. 2010 Oct 15;405(2):272-4 doi: 10.1016/j.ab.2010.06.031
pmid: 20599648
Butler MC, Itotia PN, Sullivan JM. A high-throughput biophotonics instrument to screen for novel ocular photosensitizing therapeutic agents.
Invest Ophthalmol Vis Sci. 2010 May;51(5):2705-20 doi: 10.1167/iovs.08-2862
pmid: 19834043
Waldeck W, Mueller G, Wiessler M, Brom M, Tóth K, Braun K. Autofluorescent proteins as photosensitizer in eukaryontes.
Int J Med Sci. 2009 Dec 1;6(6):365-73
pmid: 19960122
Pletnev S, Gurskaya NG, Pletneva NV, Lukyanov KA, Chudakov DM, Martynov VI, Popov VO, Kovalchuk MV, Wlodawer A, Dauter Z, Pletnev V. Structural basis for phototoxicity of the genetically encoded photosensitizer KillerRed.
J Biol Chem. 2009 Nov 13;284(46):32028-39 doi: 10.1074/jbc.M109.054973
pmid: 19737938
Carpentier P, Violot S, Blanchoin L, Bourgeois D. Structural basis for the phototoxicity of the fluorescent protein KillerRed.
FEBS Lett. 2009 Sep 3;583(17):2839-42 doi: 10.1016/j.febslet.2009.07.041
pmid: 19646983
Serebrovskaya EO, Edelweiss EF, Stremovskiy OA, Lukyanov KA, Chudakov DM, Deyev SM. Targeting cancer cells by using an antireceptor antibody-photosensitizer fusion protein.
Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9221-5 doi: 10.1073/pnas.0904140106
pmid: 19458251
Samarkina ON, Popova AG, Gvozdik EY, Chkalina AV, Zvyagin IV, Rylova YV, Rudenko NV, Lusta KA, Kelmanson IV, Gorokhovatsky AY, Vinokurov LM. Universal and rapid method for purification of GFP-like proteins by the ethanol extraction.
Protein Expr Purif. 2009 May;65(1):108-13 doi: 10.1016/j.pep.2008.11.008
pmid: 19084068
Mocz G. Fluorescent proteins and their use in marine biosciences, biotechnology, and proteomics.
Mar Biotechnol (NY). 2007 May-Jun;9(3):305-28
pmid: 17372780
Wolff M, Wiedenmann J, Nienhaus GU, Valler M, Heilker R. Novel fluorescent proteins for high-content screening.
Drug Discov Today. 2006 Dec;11(23-24):1054-60
pmid: 17129823
Giepmans BN, Adams SR, Ellisman MH, Tsien RY. The fluorescent toolbox for assessing protein location and function.
Science. 2006 Apr 14;312(5771):217-24
pmid: 16614209
